Publications

Google Scholar profile | ORCID

2025

11. Perez, R. M.; Shimogawa, M.; Chang, Y.; Phan, H. A. T.; Marmorstein, J. G.; Yanagawa, E .S. K. ; Petersson, E. J. Large Language Models for Education: ChemTAsk – An Open-Source Paradigm for Automated Q&A in the Graduate Classroom. arXiv (Pre-print) 2025. DOI: 10.48550/arXiv.2502.00016.

2024

10. Phan, H. A. T.; Hwang, D.; Young, M. C.; Sun, S. M.; Monos, D. S.; Sgourakis, N. G. Ready-to-Load MHC-I Nanoparticles for High-Throughput T Cell Screening Studies. bioRxiv (Pre-print) 2024. DOI: 10.1101/2024.12.17.628918.

9. Du, H.; Mallik, L.; Hwang, D.; Sun, Y.; Kaku, C.; Hoces, D.; Sun, S. M.; Ghinnagow, R.; Carro, S. D.; Phan, H. A. T.; Gupta, S.; Blackson, W.; Lee, H.; Choe, C. A.; Dersh, D.; Liu, J.; Bell, B.; Yang, H.; Papadaki, G. F.; Young, M. C.; Zhou, E.; El Nesr, G.; Goli, K. D.; Eisenlohr, L. C.; Minn, A. J.; Hernandez-Lopez, R. A.; Jardine, J. G.; Sgourakis, N. G.; Huang, P.-S. Targeting Peptide Antigens Using a Multiallelic MHC I-Binding System. Nature Biotechnology 2024. DOI: 10.1038/s41587-024-02505-8.

Paper featured in Nature Biotechnology - News & Views, 2024, DOI: 10.1038/s41587-024-02513-8 | EurekAlert (AAAS).

8. Marmorstein, J. G.; Pagar, V. V.; Hummingbird, E.; Saleh, I. G.; Phan, H. A. T.; Chang, Y.; Shaffer, K. D.; Venkatesh, Y.; Dmochowski, I. J.; Stebe, K. J.; Petersson, E. J. Improved Large-Scale Synthesis of Acridonylalanine for Diverse Peptide and Protein Applications. Bioconjugate Chemistry 2024. DOI: 10.1021/acs.bioconjchem.4c00411

7. Phan, H. A. T.; Chang, Y.; Eaton, S. A.; Petersson, E. J. Thioamide-Based Fluorescent Sensors for Dipeptidyl Peptidase 4. Chemical Communications 2024, 60, 13075-13078. DOI: 10.1039/D4CC03309D.

Paper featured in ChemComm 60th Anniversary Collection.

2021

6. Phan, H. A. T.; Giannakoulias, S.; Barrett, T.M.; Liu, C.; Petersson, E. J. Rational Design of Thioamide Peptides as Selective Inhibitors of Cysteine Protease Cathepsin L. Chemical Science 2021, 12 (32), 10825-10835. DOI: 10.1039/D1SC00785H.

See video abstract here. Paper highlighted by the American Peptide Society.

5. Fiore, K. E.; Phan, H. A. T.; Robkis, D. M.; Walters, C. R.; Petersson, E. J. Chapter 10 - Incorporating Thioamides into Proteins by Native Chemical Ligation. In Methods in Enzymology; Petersson, E. J., Ed.; Synthetic and Enzymatic Modifications of the Peptide Backbone; Academic Press, 2021, 656, 295–339. DOI: 10.1016/bs.mie.2021.04.011.

4. De Ravin, E.; Phan, H. A. T.; Harmsen, S.; Cho, S. S.; Teng, C. W.; Petersson, E. J.; White, C.; Galban, E. M.; Hess, R.; Lee, J. Y. K. Somatostatin Receptor as a Molecular Imaging Target in Human and Canine Cushing Disease. World Neurosurgery 2021, 149, 94–102. DOI: 10.1016/j.wneu.2021.02.034.

2020

3. Giannakoulias, S.; Shringari, S.; Liu, C.; Phan, H. A. T.; Barrett, T.; Ferrie, J.J.; Petersson, E. J. Rosetta-Based Machine Learning Models Accurately Classify Positional Effects of Thioamides on Proteolysis. Journal of Physical Chemistry B 2020, 124, 37, 8032–804. DOI: 10.1021/acs.jpcb.0c05981.

Published as part of The Journal of Physical Chemistry virtual special issue “Machine Learning in Physical Chemistry”.

2. Barrett, T. M.; Chen, X. S.; Liu, C.; Giannakoulias, S.; Phan, H. A. T.; Wang, J.; Keenan, E. K.; Karpowicz, R.J.; Petersson, E. J. Studies of Thioamide Positional Effects on Serine Protease Activity Enable Two-Site Stabilization of Cancer Imaging Peptides. ACS Chemical Biology 2020, 15, 3, 774–779. DOI: 10.1021/acschembio.9b01036.

2018

1. Phan, H. A. T. The Impact of Copper(I) on Zinc-finger Structure & Function: A Focus on Transcription Factor Sp1. Macalester College Chemistry Honors Projects. 2018, 24.
Link to Thesis